PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.15691s0008.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family TCP
Protein Properties Length: 280aa    MW: 30144.6 Da    PI: 8.0939
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.15691s0008.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP134.96.9e-42471732112
                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg. 88 
                           ++k+++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss s+ s++ 
  Araha.15691s0008.1.p  47 PPKRTSTKDRHTKVEGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSRSSLSAAh 135
                           789******************************************************************99985555555555444444 PP

                   TCP  89 .............kaaksaa.kskksqksaasalnlak 112
                                        +++ +++ +++++ +++++ ++ + 
  Araha.15691s0008.1.p 136 lrttpssyyfhspHQSMTHHlQHQHQVRPKNESHSSSS 173
                           54556666655442233332233333333332222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.8E-4151174IPR005333Transcription factor, TCP
PROSITE profilePS5136928.00853107IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0010229Biological Processinflorescence development
GO:0010252Biological Processauxin homeostasis
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0042023Biological ProcessDNA endoreduplication
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MDPDPDHNPN HHRPNFPLQL LDSSSSSSTS LAIISTSEPN SEPKKPPPKR TSTKDRHTKV  60
EGRGRRIRMP AMCAARVFQL TRELGHKSDG ETIEWLLQQA EPAVIAATGT GTIPANFTSL  120
NISLRSSRSS LSAAHLRTTP SSYYFHSPHQ SMTHHLQHQH QVRPKNESHS SSSSSSQLLD  180
HNQMGNYLVQ STAGSLPTSQ SPATAPFWSS GDNTQNLWAF NINPHHSGVV AGDVYNPNGG  240
GGGGSGAGGG TANHNNNQQN RDGDHHHNHQ EDGSTSHHS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00224DAPTransfer from AT1G69690Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0132890.0AC013289.11 Arabidopsis thaliana chromosome 1 BAC T6C23 genomic sequence, complete sequence.
GenBankAY0563840.0AY056384.1 Arabidopsis thaliana At1g69690/T6C23_11 mRNA, complete cds.
GenBankAY0817060.0AY081706.1 Arabidopsis thaliana At1g69690/T6C23_11 mRNA, complete cds.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_564973.11e-145transcription factor TCP15
SwissprotQ9C9L21e-147TCP15_ARATH; Transcription factor TCP15
TrEMBLA0A0D3CXL91e-131A0A0D3CXL9_BRAOL; Uncharacterized protein
STRINGAT1G69690.11e-144(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM129651830
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69690.11e-116TCP family protein